R/RcppExports.R
stappDP_merdecomp.Rdfits a functional dirichlet process linear mixed effects regression model with N observations and n subjects using a between-within effects decomposition on the STAP-DP design matrix
stappDP_merdecomp( y, Z, X_b, X_w, W, S_b, S_w, w, subj_mat_, subj_n, alpha_a, alpha_b, sigma_a, sigma_b, tau_a, tau_b, K, num_penalties, iter_max, burn_in, thin, seed, num_posterior_samples, fix_alpha )
| y | a vector of continuous outcomes |
|---|---|
| Z | a matrix of population level confounders |
| X_b | Matrix of between subject spatial temporal aggregated predictor covariates |
| X_w | Matrix of within subject spatial temporal aggregated predictor covariates |
| W | a design matrix for group specific terms |
| S_b | penalty matrix corresponding to between subject covariate matrix |
| S_w | penalty matrix corresponding to within subject covariate matrix |
| w | a vector of weights for weighted regression |
| subj_mat_ | N x n sparse matrix used to aggregate subject observations |
| subj_n | n x 1 vector of integers representing how many observations correspond to each subject |
| alpha_a | alpha gamma prior shape hyperparameter |
| alpha_b | alpha gamma prior scale hyperparameter |
| sigma_a | precision gamma prior shape hyperparameter |
| sigma_b | precision gamma prior scale hyperparameter |
| tau_a | penalty gamma prior shape hyperparameter |
| tau_b | penalty gamma prior scale hyperparameter |
| K | truncation number |
| num_penalties | number of penalty matrices accounted for in S |
| iter_max | maximum number of iterations |
| burn_in | number of burn in iterations |
| thin | number by which to thin samples |
| seed | rng initializer |
| num_posterior_samples | total number of posterior samples |
| fix_alpha | boolean value that determines whether or not to fix alpha in sampler |