R/RcppExports.R
stappDP_merdecomp.Rd
fits a functional dirichlet process linear mixed effects regression model with N observations and n subjects using a between-within effects decomposition on the STAP-DP design matrix
stappDP_merdecomp( y, Z, X_b, X_w, W, S_b, S_w, w, subj_mat_, subj_n, alpha_a, alpha_b, sigma_a, sigma_b, tau_a, tau_b, K, num_penalties, iter_max, burn_in, thin, seed, num_posterior_samples, fix_alpha )
y | a vector of continuous outcomes |
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Z | a matrix of population level confounders |
X_b | Matrix of between subject spatial temporal aggregated predictor covariates |
X_w | Matrix of within subject spatial temporal aggregated predictor covariates |
W | a design matrix for group specific terms |
S_b | penalty matrix corresponding to between subject covariate matrix |
S_w | penalty matrix corresponding to within subject covariate matrix |
w | a vector of weights for weighted regression |
subj_mat_ | N x n sparse matrix used to aggregate subject observations |
subj_n | n x 1 vector of integers representing how many observations correspond to each subject |
alpha_a | alpha gamma prior shape hyperparameter |
alpha_b | alpha gamma prior scale hyperparameter |
sigma_a | precision gamma prior shape hyperparameter |
sigma_b | precision gamma prior scale hyperparameter |
tau_a | penalty gamma prior shape hyperparameter |
tau_b | penalty gamma prior scale hyperparameter |
K | truncation number |
num_penalties | number of penalty matrices accounted for in S |
iter_max | maximum number of iterations |
burn_in | number of burn in iterations |
thin | number by which to thin samples |
seed | rng initializer |
num_posterior_samples | total number of posterior samples |
fix_alpha | boolean value that determines whether or not to fix alpha in sampler |